Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin transporter bioy | VO01_RS07270 | Not Available | Positive | 1518458 - 1519099 | 21181.8 |
| energy-coupling factor abc transporter atp-binding protein | VO01_RS07275 | Not Available | Positive | 1519096 - 1519800 | 24856.9 |
| energy-coupling factor transporter transmembrane component t family protein | VO01_RS07280 | Not Available | Positive | 1519797 - 1520408 | 21334.8 |
| hypothetical protein | VO01_RS07285 | Not Available | Positive | 1520490 - 1520681 | 6586.47 |
| nif3-like dinuclear metal center hexameric protein | VO01_RS07290 | Not Available | Positive | 1520734 - 1521561 | 28712.1 |
| zinc ribbon domain-containing protein | VO01_RS07295 | Not Available | Positive | 1521653 - 1522387 | 27432.6 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 1522431 - 1522812 | Not Available |
| polyphosphate--glucose phosphotransferase | VO01_RS07300 | Not Available | Negative | 1522880 - 1523701 | 28857.7 |
| hypothetical protein | VO01_RS07305 | Not Available | Positive | 1523776 - 1523958 | 6870.65 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | VO01_RS07310 | Not Available | Negative | 1523968 - 1524837 | 30503.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
