Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | VO01_RS00220 | Not Available | Negative | 42530 - 43219 | 24556.3 |
| 30s ribosomal protein s6 | VO01_RS00225 | Not Available | Negative | 43243 - 44241 | 36758.5 |
| 30s ribosomal protein s6 | VO01_RS16495 | Not Available | Negative | 44313 - 44981 | 23332.7 |
| 30s ribosomal protein s6 | VO01_RS18080 | Not Available | Positive | 45308 - 45415 | 3761.3 |
| hypothetical protein | VO01_RS00245 | Not Available | Positive | 47687 - 48298 | 23246.2 |
| hypothetical protein | VO01_RS00250 | Not Available | Negative | 48312 - 48812 | 17236.1 |
| helix-turn-helix domain-containing protein | VO01_RS00255 | Not Available | Negative | 49042 - 49290 | 9127.06 |
| thioester reductase domain-containing protein | VO01_RS00260 | Not Available | Negative | 49399 - 52734 | 118312.0 |
| 4'-phosphopantetheinyl transferase | VO01_RS00265 | Not Available | Negative | 52814 - 53425 | 20259.1 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS00270 | Not Available | Positive | 53717 - 54484 | 25838.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
