Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | VO01_RS07170 | Not Available | Positive | 1498764 - 1499492 | 26181.4 |
| serine o-acetyltransferase | VO01_RS07175 | Not Available | Positive | 1499489 - 1499992 | 17978.0 |
| oligosaccharide flippase family protein | VO01_RS07180 | Not Available | Positive | 1500027 - 1501451 | 49624.8 |
| sugar transferase | VO01_RS07185 | Not Available | Negative | 1501467 - 1503032 | 57661.4 |
| hypothetical protein | VO01_RS07190 | Not Available | Negative | 1503176 - 1503463 | 10039.0 |
| cold-shock protein | VO01_RS07195 | Not Available | Negative | 1503580 - 1503783 | 7216.43 |
| bifunctional 3'-5' exonuclease/dna polymerase | VO01_RS07200 | Not Available | Positive | 1504063 - 1505973 | 67510.9 |
| duf1684 domain-containing protein | VO01_RS07205 | Not Available | Positive | 1506081 - 1506932 | 30298.7 |
| padr family transcriptional regulator | VO01_RS07210 | Not Available | Negative | 1506934 - 1507536 | 21286.3 |
| duf3145 domain-containing protein | VO01_RS07215 | Not Available | Positive | 1507801 - 1508319 | 18988.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
