Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | VO01_RS07120 | Not Available | Positive | 1487322 - 1488581 | 45947.8 |
| Trna-met | Not Available | Not Available | Positive | 1488594 - 1488667 | Not Available |
| acyltransferase family protein | VO01_RS07130 | Not Available | Positive | 1488925 - 1491117 | 77229.9 |
| gdp-l-fucose synthase family protein | VO01_RS07135 | Not Available | Negative | 1491207 - 1492211 | 36222.7 |
| gdp-mannose 4,6-dehydratase | VO01_RS07140 | Not Available | Negative | 1492208 - 1493260 | 38987.7 |
| glycosyltransferase family 4 protein | VO01_RS07145 | Not Available | Positive | 1493431 - 1494717 | 45530.1 |
| acetyltransferase | VO01_RS07150 | Not Available | Positive | 1494714 - 1495295 | 21106.5 |
| polysaccharide pyruvyl transferase family protein | VO01_RS07155 | Not Available | Positive | 1495399 - 1496334 | 34631.3 |
| glycosyltransferase | VO01_RS07160 | Not Available | Positive | 1496331 - 1497563 | 44278.5 |
| putative colanic acid polymerase wcad | VO01_RS07165 | Not Available | Positive | 1497560 - 1498843 | 45033.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
