Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | VO01_RS07070 | Not Available | Positive | 1478014 - 1479105 | 38942.6 |
| abc transporter permease | VO01_RS07075 | Not Available | Positive | 1479107 - 1480084 | 34441.5 |
| dipeptide abc transporter atp-binding protein | VO01_RS07080 | Not Available | Positive | 1480081 - 1481793 | 60575.9 |
| abc transporter atp-binding protein | VO01_RS07085 | Not Available | Positive | 1481907 - 1482863 | 33657.1 |
| d-isomer specific 2-hydroxyacid dehydrogenase family protein | VO01_RS07090 | Not Available | Positive | 1482974 - 1483879 | 31742.7 |
| lactonase family protein | VO01_RS07095 | Not Available | Positive | 1483946 - 1484974 | 34241.4 |
| hypothetical protein | VO01_RS07100 | Not Available | Negative | 1484989 - 1485363 | 13354.9 |
| Trna-asn | Not Available | Not Available | Positive | 1485476 - 1485551 | Not Available |
| peptide deformylase | VO01_RS07110 | Not Available | Negative | 1485627 - 1486193 | 20934.7 |
| dmt family transporter | VO01_RS07115 | Not Available | Positive | 1486233 - 1487144 | 31200.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
