Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenyl transferase | VO01_RS07020 | Not Available | Positive | 1466431 - 1467291 | 32373.9 |
| gfo/idh/moca family oxidoreductase | VO01_RS07025 | Not Available | Positive | 1467302 - 1468411 | 39122.8 |
| glycine--trna ligase | VO01_RS07030 | Not Available | Positive | 1468523 - 1469908 | 52429.6 |
| aminoacyl-trna deacylase | VO01_RS07035 | Not Available | Negative | 1469960 - 1470493 | 18177.8 |
| dsba family protein | VO01_RS07040 | Not Available | Positive | 1470546 - 1471271 | 26289.9 |
| hypothetical protein | VO01_RS07045 | Not Available | Positive | 1471268 - 1471474 | 6348.31 |
| trna dihydrouridine synthase dusb | VO01_RS07050 | Not Available | Positive | 1471567 - 1472793 | 43309.4 |
| deoxyguanosinetriphosphate triphosphohydrolase | VO01_RS07055 | Not Available | Positive | 1472783 - 1474057 | 46651.6 |
| dna primase | VO01_RS07060 | Not Available | Positive | 1474119 - 1476011 | 68610.4 |
| 30s ribosomal protein s6 | VO01_RS07065 | Not Available | Positive | 1476213 - 1477867 | 57415.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
