Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1990 family protein | VO01_RS06920 | Not Available | Positive | 1445412 - 1446065 | 23805.2 |
| had family hydrolase | VO01_RS06925 | Not Available | Negative | 1446087 - 1446788 | 24517.0 |
| radical sam family heme chaperone hemw | VO01_RS06930 | Not Available | Positive | 1446864 - 1448087 | 43694.5 |
| voc family protein | VO01_RS06935 | Not Available | Negative | 1448106 - 1448519 | 14757.0 |
| duf4870 domain-containing protein | VO01_RS06940 | Not Available | Negative | 1448530 - 1448925 | 14546.2 |
| heat-inducible transcriptional repressor hrca | VO01_RS06945 | Not Available | Positive | 1449113 - 1450135 | 36627.9 |
| molecular chaperone dnaj | VO01_RS06950 | Not Available | Positive | 1450196 - 1451311 | 40117.5 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | VO01_RS06955 | Not Available | Positive | 1451314 - 1452066 | 26009.3 |
| histidine triad nucleotide-binding protein | VO01_RS06960 | Not Available | Positive | 1452095 - 1452451 | 12521.9 |
| phoh family protein | VO01_RS06965 | Not Available | Positive | 1452438 - 1453487 | 38537.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
