Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | VO01_RS06775 | Not Available | Positive | 1412876 - 1413781 | 32219.5 |
| abc transporter permease | VO01_RS06780 | Not Available | Positive | 1413778 - 1414476 | 24662.0 |
| abc transporter permease | VO01_RS06785 | Not Available | Positive | 1414473 - 1415198 | 24591.6 |
| abc transporter substrate-binding protein | VO01_RS06790 | Not Available | Positive | 1415213 - 1416139 | 32519.0 |
| duf3618 domain-containing protein | VO01_RS06795 | Not Available | Positive | 1416289 - 1416759 | 16334.5 |
| type iii polyketide synthase | VO01_RS06800 | Not Available | Positive | 1416756 - 1417973 | 41855.0 |
| class i sam-dependent methyltransferase | VO01_RS06805 | Not Available | Positive | 1417973 - 1418695 | 25987.9 |
| fad-dependent oxidoreductase | VO01_RS06810 | Not Available | Positive | 1418692 - 1419882 | 40902.5 |
| ubia family prenyltransferase | VO01_RS06815 | Not Available | Negative | 1419875 - 1420720 | 28140.0 |
| gnat family n-acetyltransferase | VO01_RS06820 | Not Available | Negative | 1420717 - 1421187 | 16693.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
