Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | VO01_RS06675 | Not Available | Positive | 1389974 - 1390903 | 31833.1 |
| histidinol-phosphate transaminase | VO01_RS06680 | Not Available | Negative | 1390964 - 1392082 | 40778.3 |
| alpha/beta fold hydrolase | VO01_RS06685 | Not Available | Positive | 1392167 - 1393072 | 33269.7 |
| esterase/lipase family protein | VO01_RS06690 | Not Available | Positive | 1393140 - 1393874 | 26620.0 |
| mfs transporter | VO01_RS06695 | Not Available | Positive | 1393906 - 1395327 | 47405.1 |
| nad(p)h-quinone oxidoreductase | VO01_RS06700 | Not Available | Negative | 1395324 - 1396301 | 33224.9 |
| ycei family protein | VO01_RS06705 | Not Available | Positive | 1396456 - 1397022 | 20049.3 |
| is481-like element is1122 family transposase | VO01_RS06710 | Not Available | Negative | 1397033 - 1397995 | 36104.6 |
| alpha/beta fold hydrolase | VO01_RS06715 | Not Available | Negative | 1398202 - 1399134 | 33187.1 |
| fusc family protein | VO01_RS06720 | Not Available | Negative | 1399131 - 1400177 | 37191.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
