Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nuclease-related domain-containing protein | VO01_RS06625 | Not Available | Negative | 1378625 - 1379620 | 35818.8 |
| hypothetical protein | VO01_RS06630 | Not Available | Positive | 1379692 - 1380048 | 12360.9 |
| sgnh/gdsl hydrolase family protein | VO01_RS06635 | Not Available | Positive | 1380177 - 1381109 | 30453.8 |
| deor/glpr family dna-binding transcription regulator | VO01_RS06640 | Not Available | Positive | 1381243 - 1382031 | 27299.5 |
| 1-phosphofructokinase family hexose kinase | VO01_RS06645 | Not Available | Positive | 1382028 - 1382999 | 32799.3 |
| fructose-specific pts transporter subunit eiic | VO01_RS06650 | Not Available | Positive | 1383022 - 1385070 | 68663.8 |
| hpr family phosphocarrier protein | VO01_RS06655 | Not Available | Positive | 1385128 - 1385400 | 9229.0 |
| sdr family oxidoreductase | VO01_RS06660 | Not Available | Negative | 1385475 - 1387028 | 55082.6 |
| hypothetical protein | VO01_RS06665 | Not Available | Negative | 1387086 - 1387349 | 9106.81 |
| dead/deah box helicase | VO01_RS06670 | Not Available | Positive | 1387437 - 1389977 | 92999.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
