Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l27 | VO01_RS06575 | Not Available | Positive | 1371038 - 1371292 | 8696.45 |
| gtpase obge | VO01_RS06580 | Not Available | Positive | 1371415 - 1372953 | 54277.2 |
| glutamate 5-kinase | VO01_RS06585 | Not Available | Positive | 1372957 - 1373736 | 26703.8 |
| glutamate-5-semialdehyde dehydrogenase | VO01_RS06590 | Not Available | Positive | 1373787 - 1375094 | 45008.6 |
| hypothetical protein | VO01_RS06595 | Not Available | Positive | 1375192 - 1375407 | 7684.21 |
| nicotinate-nucleotide adenylyltransferase | VO01_RS06600 | Not Available | Positive | 1375425 - 1376027 | 22368.8 |
| hypothetical protein | VO01_RS06605 | Not Available | Positive | 1376024 - 1377508 | 50616.2 |
| ribosome silencing factor | VO01_RS06610 | Not Available | Positive | 1377548 - 1377925 | 13643.2 |
| zf-tfiib domain-containing protein | VO01_RS06615 | Not Available | Positive | 1377975 - 1378391 | 15307.5 |
| Trna-ala | Not Available | Not Available | Positive | 1378493 - 1378565 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
