Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS16310 | Not Available | Positive | 1358973 - 1359188 | 7326.69 |
| class i sam-dependent methyltransferase | VO01_RS16315 | Not Available | Positive | 1359250 - 1360008 | 26518.4 |
| isoleucine--trna ligase | VO01_RS06535 | Not Available | Positive | 1360253 - 1363555 | 122679.0 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | VO01_RS06540 | Not Available | Positive | 1363552 - 1365120 | 55501.7 |
| duf4233 domain-containing protein | VO01_RS06545 | Not Available | Positive | 1365117 - 1365614 | 17289.5 |
| nucleoside-diphosphate kinase | VO01_RS06550 | Not Available | Positive | 1365624 - 1366043 | 15121.2 |
| vitamin k epoxide reductase family protein | VO01_RS06555 | Not Available | Negative | 1366104 - 1366712 | 21461.9 |
| rne/rng family ribonuclease | VO01_RS06560 | Not Available | Positive | 1367018 - 1370044 | 108916.0 |
| duf4031 domain-containing protein | VO01_RS06565 | Not Available | Negative | 1370134 - 1370412 | 10302.1 |
| 50s ribosomal protein l21 | VO01_RS06570 | Not Available | Positive | 1370705 - 1371013 | 11221.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
