Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | VO01_RS06480 | Not Available | Negative | 1345657 - 1346109 | 16748.5 |
| valine--trna ligase | VO01_RS06485 | Not Available | Negative | 1346106 - 1348751 | 97073.8 |
| phosphoenolpyruvate carboxykinase (gtp) | VO01_RS06490 | Not Available | Negative | 1348893 - 1350839 | 70498.5 |
| helix-turn-helix domain-containing protein | VO01_RS06495 | Not Available | Positive | 1350951 - 1352378 | 52403.1 |
| dipeptide abc transporter atp-binding protein | VO01_RS16300 | Not Available | Negative | 1352402 - 1354072 | 58649.5 |
| abc transporter permease | VO01_RS06505 | Not Available | Negative | 1354069 - 1354929 | 28721.9 |
| abc transporter permease | VO01_RS06510 | Not Available | Negative | 1354926 - 1355996 | 35942.7 |
| abc transporter substrate-binding protein | VO01_RS06515 | Not Available | Negative | 1355993 - 1357639 | 58155.6 |
| tetr/acrr family transcriptional regulator | VO01_RS06520 | Not Available | Positive | 1357744 - 1358349 | 20314.2 |
| expansin exlx1 family cellulose-binding protein | VO01_RS16305 | Not Available | Positive | 1358459 - 1358956 | 16805.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
