Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 1336385 - 1336458 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 1336650 - 1336725 | Not Available |
| trigger factor | VO01_RS06440 | Not Available | Positive | 1336791 - 1338242 | 52475.2 |
| atp-dependent clp protease proteolytic subunit | VO01_RS06445 | Not Available | Positive | 1338441 - 1339028 | 20976.9 |
| atp-dependent clp protease proteolytic subunit | VO01_RS06450 | Not Available | Positive | 1339065 - 1339745 | 24591.2 |
| dimethylsulfone monooxygenase sfng | VO01_RS06455 | Not Available | Negative | 1339807 - 1340949 | 42699.1 |
| atp-dependent clp protease atp-binding subunit clpx | VO01_RS06460 | Not Available | Positive | 1341118 - 1342398 | 46367.9 |
| m3 family metallopeptidase | VO01_RS06465 | Not Available | Negative | 1342475 - 1344538 | 76157.0 |
| methyltransferase domain-containing protein | VO01_RS06470 | Not Available | Positive | 1344578 - 1345381 | 28895.8 |
| hypothetical protein | VO01_RS06475 | Not Available | Negative | 1345394 - 1345657 | 9552.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
