Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioesterase | VO01_RS06380 | Not Available | Negative | 1321575 - 1322480 | 33250.3 |
| hypothetical protein | VO01_RS06385 | Not Available | Positive | 1322564 - 1323259 | 23609.1 |
| globin | VO01_RS06390 | Not Available | Negative | 1323310 - 1323705 | 15202.9 |
| mechanosensitive ion channel family protein | VO01_RS06395 | Not Available | Negative | 1323705 - 1325018 | 45989.3 |
| aminopeptidase n | VO01_RS06400 | Not Available | Negative | 1325181 - 1327724 | 93488.9 |
| dsba family protein | VO01_RS06405 | Not Available | Positive | 1327877 - 1328449 | 20990.8 |
| ribose-5-phosphate isomerase | VO01_RS06410 | Not Available | Positive | 1328620 - 1329108 | 17318.0 |
| fpg/nei family dna glycosylase | VO01_RS06415 | Not Available | Positive | 1329115 - 1330104 | 36426.6 |
| dps family protein | VO01_RS06420 | Not Available | Negative | 1330162 - 1330647 | 17107.2 |
| sco7613 c-terminal domain-containing membrane protein | VO01_RS06425 | Not Available | Negative | 1330802 - 1336036 | 172578.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
