Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | VO01_RS06080 | Not Available | Positive | 1257110 - 1258105 | 34276.4 |
| 1,4-alpha-glucan branching protein glgb | VO01_RS06085 | Not Available | Negative | 1258181 - 1260757 | 94032.2 |
| alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase | VO01_RS06090 | Not Available | Negative | 1260754 - 1262742 | 73850.5 |
| alpha-glucan family phosphorylase | VO01_RS06095 | Not Available | Positive | 1263440 - 1265995 | 93147.5 |
| sgnh/gdsl hydrolase family protein | VO01_RS06100 | Not Available | Negative | 1266050 - 1267381 | 46730.6 |
| glycogen debranching protein | VO01_RS06105 | Not Available | Negative | 1267528 - 1269585 | 74792.3 |
| cysteine desulfurase family protein | VO01_RS06110 | Not Available | Positive | 1269604 - 1270809 | 41257.3 |
| trna 2-thiouridine(34) synthase mnma | VO01_RS06115 | Not Available | Positive | 1270806 - 1271969 | 40737.2 |
| nad-dependent dna ligase liga | VO01_RS06120 | Not Available | Positive | 1271977 - 1274469 | 88519.6 |
| alpha/beta hydrolase | VO01_RS06125 | Not Available | Positive | 1274583 - 1275953 | 46941.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
