Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | VO01_RS06030 | Not Available | Positive | 1246310 - 1246828 | 19185.9 |
| phosphatidate cytidylyltransferase | VO01_RS06035 | Not Available | Positive | 1246829 - 1247869 | 36575.1 |
| diviva domain-containing protein | VO01_RS06040 | Not Available | Positive | 1247880 - 1248425 | 20723.2 |
| hypothetical protein | VO01_RS06045 | Not Available | Positive | 1248528 - 1249232 | 24028.1 |
| cation:proton antiporter | VO01_RS06050 | Not Available | Positive | 1249304 - 1251034 | 61110.1 |
| hypothetical protein | VO01_RS06055 | Not Available | Positive | 1251070 - 1251366 | 11266.3 |
| alpha/beta hydrolase | VO01_RS06060 | Not Available | Positive | 1251363 - 1252097 | 26013.1 |
| ai-2e family transporter | VO01_RS06065 | Not Available | Negative | 1252113 - 1253171 | 37146.8 |
| hypothetical protein | VO01_RS06070 | Not Available | Negative | 1253200 - 1254975 | 66814.1 |
| hypothetical protein | VO01_RS06075 | Not Available | Positive | 1255260 - 1257113 | 63092.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
