Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS05980 | Not Available | Negative | 1236816 - 1237178 | 12852.9 |
| hypothetical protein | VO01_RS05985 | Not Available | Negative | 1237175 - 1237357 | 6987.4 |
| recombinase family protein | VO01_RS05990 | Not Available | Negative | 1237915 - 1239345 | 52155.0 |
| dna-processing protein dpra | VO01_RS05995 | Not Available | Positive | 1239381 - 1239896 | 17335.7 |
| tyrosine recombinase xerc | VO01_RS06000 | Not Available | Positive | 1239989 - 1240966 | 33902.6 |
| murein hydrolase activator envc family protein | VO01_RS06005 | Not Available | Negative | 1241036 - 1241587 | 18536.3 |
| sugar porter family mfs transporter | VO01_RS06010 | Not Available | Positive | 1241706 - 1243163 | 52234.9 |
| 30s ribosomal protein s2 | VO01_RS06015 | Not Available | Positive | 1243398 - 1244345 | 34991.4 |
| translation elongation factor ts | VO01_RS06020 | Not Available | Positive | 1244456 - 1245283 | 29304.8 |
| ump kinase | VO01_RS06025 | Not Available | Positive | 1245443 - 1246159 | 25243.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
