Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS05925 | Not Available | Negative | 1229171 - 1229935 | 27255.2 |
| hypothetical protein | VO01_RS05930 | Not Available | Positive | 1230208 - 1230498 | 10762.5 |
| hypothetical protein | VO01_RS05935 | Not Available | Negative | 1230505 - 1230714 | 6804.66 |
| hypothetical protein | VO01_RS05940 | Not Available | Negative | 1230749 - 1231630 | 29381.4 |
| sialate o-acetylesterase | VO01_RS16295 | Not Available | Negative | 1231708 - 1234197 | 86243.2 |
| hypothetical protein | VO01_RS05950 | Not Available | Negative | 1234441 - 1234764 | 11790.0 |
| hypothetical protein | VO01_RS05960 | Not Available | Negative | 1235021 - 1235416 | 13689.8 |
| hypothetical protein | VO01_RS05965 | Not Available | Negative | 1235626 - 1235814 | 6524.64 |
| hypothetical protein | VO01_RS05970 | Not Available | Negative | 1235807 - 1236052 | 8842.17 |
| hypothetical protein | VO01_RS05975 | Not Available | Negative | 1236049 - 1236789 | 26029.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
