Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS05795 | Not Available | Positive | 1203533 - 1204048 | 18658.3 |
| 30s ribosomal protein s6 | VO01_RS17050 | Not Available | Positive | 1204146 - 1204329 | 5881.99 |
| hypothetical protein | VO01_RS17420 | Not Available | Positive | 1204343 - 1204504 | 5942.03 |
| hypothetical protein | VO01_RS05800 | Not Available | Positive | 1204821 - 1205024 | 7431.76 |
| 30s ribosomal protein s6 | VO01_RS16690 | Not Available | Positive | 1205354 - 1205491 | 5093.05 |
| mfs transporter | VO01_RS05805 | Not Available | Positive | 1205780 - 1207039 | 43719.9 |
| acyl carrier protein | VO01_RS05810 | Not Available | Positive | 1207036 - 1207596 | 19896.4 |
| hypothetical protein | VO01_RS05815 | Not Available | Positive | 1207593 - 1208369 | 28455.2 |
| gnat family n-acetyltransferase | VO01_RS05820 | Not Available | Negative | 1208383 - 1209507 | 40615.6 |
| chromosome segregation smc family protein | VO01_RS05825 | Not Available | Positive | 1209665 - 1213393 | 133232.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
