Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease iii | VO01_RS05745 | Not Available | Positive | 1192294 - 1193010 | 25122.8 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | VO01_RS05750 | Not Available | Positive | 1193017 - 1193925 | 32761.6 |
| tigr02391 family protein | VO01_RS05755 | Not Available | Negative | 1194143 - 1194850 | 25270.9 |
| dcl family protein | VO01_RS05760 | Not Available | Positive | 1194963 - 1195508 | 19775.6 |
| 4'-phosphopantetheinyl transferase | VO01_RS05765 | Not Available | Negative | 1195690 - 1196277 | 20860.8 |
| amino acid adenylation domain-containing protein | VO01_RS05770 | Not Available | Negative | 1196392 - 1200153 | 135571.0 |
| eama family transporter | VO01_RS05775 | Not Available | Negative | 1200179 - 1201096 | 31266.9 |
| uracil phosphoribosyltransferase | VO01_RS05780 | Not Available | Negative | 1201093 - 1201785 | 25172.3 |
| had family hydrolase | VO01_RS05785 | Not Available | Negative | 1201782 - 1202474 | 24290.5 |
| pseudouridine-5'-phosphate glycosidase | VO01_RS05790 | Not Available | Negative | 1202471 - 1203388 | 31269.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
