Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3515 family protein | VO01_RS05695 | Not Available | Negative | 1181435 - 1181947 | 17212.2 |
| thiamine-phosphate kinase | VO01_RS05700 | Not Available | Positive | 1181972 - 1183057 | 35674.5 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | VO01_RS05705 | Not Available | Negative | 1183054 - 1183668 | 21364.2 |
| aaa family atpase | VO01_RS05710 | Not Available | Positive | 1183932 - 1184906 | 34899.0 |
| duf58 domain-containing protein | VO01_RS05715 | Not Available | Positive | 1184911 - 1186239 | 47587.6 |
| transglutaminasetgpa domain-containing protein | VO01_RS05720 | Not Available | Positive | 1186236 - 1188773 | 86127.5 |
| atp-dependent dna helicase recg | VO01_RS05725 | Not Available | Positive | 1188770 - 1190953 | 78895.4 |
| pantetheine-phosphate adenylyltransferase | VO01_RS05730 | Not Available | Positive | 1190979 - 1191470 | 17556.5 |
| yced family protein | VO01_RS05735 | Not Available | Positive | 1191490 - 1192062 | 20987.4 |
| 50s ribosomal protein l32 | VO01_RS05740 | Not Available | Positive | 1192065 - 1192268 | 7609.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
