Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | VO01_RS05645 | Not Available | Negative | 1171197 - 1171871 | 23888.4 |
| terc family protein | VO01_RS05650 | Not Available | Positive | 1172022 - 1173062 | 38234.7 |
| pp2c family protein-serine/threonine phosphatase | VO01_RS05655 | Not Available | Positive | 1173059 - 1173880 | 28264.0 |
| 3-isopropylmalate dehydratase large subunit | VO01_RS05660 | Not Available | Positive | 1173946 - 1175427 | 52375.1 |
| 3-isopropylmalate dehydratase small subunit | VO01_RS05665 | Not Available | Positive | 1175431 - 1176045 | 22782.9 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | VO01_RS05670 | Not Available | Positive | 1176046 - 1177416 | 48887.9 |
| lysophospholipid acyltransferase family protein | VO01_RS05675 | Not Available | Positive | 1177540 - 1178277 | 27240.0 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | VO01_RS05680 | Not Available | Positive | 1178270 - 1179340 | 37293.6 |
| d-alanine--d-alanine ligase family protein | VO01_RS05685 | Not Available | Positive | 1179343 - 1180452 | 38701.7 |
| glycosyltransferase family 2 protein | VO01_RS05690 | Not Available | Positive | 1180492 - 1181478 | 34964.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
