Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycei family protein | VO01_RS18105 | Not Available | Negative | 1160994 - 1161944 | 32653.0 |
| mth1187 family thiamine-binding protein | VO01_RS05600 | Not Available | Positive | 1161885 - 1162202 | 11029.0 |
| mfs transporter | VO01_RS05605 | Not Available | Positive | 1162253 - 1163533 | 43253.6 |
| response regulator transcription factor | VO01_RS05610 | Not Available | Negative | 1163564 - 1164220 | 23600.6 |
| hypothetical protein | VO01_RS05615 | Not Available | Negative | 1164248 - 1165480 | 43257.0 |
| sensor histidine kinase | VO01_RS05620 | Not Available | Negative | 1165477 - 1166622 | 40546.5 |
| response regulator | VO01_RS05625 | Not Available | Negative | 1166802 - 1167482 | 24509.3 |
| homoserine o-acetyltransferase | VO01_RS05630 | Not Available | Negative | 1167605 - 1168816 | 42939.6 |
| bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase | VO01_RS05635 | Not Available | Negative | 1168858 - 1170228 | 48469.1 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS05640 | Not Available | Positive | 1170363 - 1171160 | 27695.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
