Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | VO01_RS05545 | Not Available | Negative | 1147631 - 1149094 | 49859.8 |
| sigma-70 family rna polymerase sigma factor | VO01_RS05550 | Not Available | Positive | 1149324 - 1149983 | 24863.1 |
| mycothiol system anti-sigma-r factor | VO01_RS05555 | Not Available | Positive | 1149980 - 1150222 | 9061.68 |
| gnat family n-acetyltransferase | VO01_RS05560 | Not Available | Positive | 1150258 - 1150698 | 15900.9 |
| multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit | VO01_RS05565 | Not Available | Negative | 1150817 - 1154641 | 140043.0 |
| guab1 family imp dehydrogenase-related protein | VO01_RS05570 | Not Available | Positive | 1154821 - 1156260 | 49534.3 |
| hemolysin family protein | VO01_RS05575 | Not Available | Positive | 1156374 - 1157804 | 51537.4 |
| hemolysin family protein | VO01_RS05580 | Not Available | Positive | 1157797 - 1158840 | 37173.3 |
| nadh:flavin oxidoreductase/nadh oxidase | VO01_RS05585 | Not Available | Negative | 1158907 - 1159986 | 38529.2 |
| nad(p)h-hydrate dehydratase | VO01_RS05590 | Not Available | Positive | 1160065 - 1160997 | 31599.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
