Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylulokinase | VO01_RS05445 | Not Available | Positive | 1127621 - 1129054 | 48466.5 |
| cpaf family protein | VO01_RS05450 | Not Available | Positive | 1129126 - 1130361 | 44393.8 |
| type ii secretion system f family protein | VO01_RS05455 | Not Available | Positive | 1130358 - 1131221 | 29974.6 |
| type ii secretion system f family protein | VO01_RS17775 | Not Available | Positive | 1131816 - 1132169 | 12433.5 |
| hypothetical protein | VO01_RS05465 | Not Available | Positive | 1132220 - 1132414 | 6920.33 |
| tade/tadg family type iv pilus assembly protein | VO01_RS05470 | Not Available | Positive | 1132414 - 1132791 | 12754.5 |
| hypothetical protein | VO01_RS05475 | Not Available | Positive | 1132766 - 1133221 | 15552.5 |
| pilus assembly protein tadg-related protein | VO01_RS05480 | Not Available | Positive | 1133275 - 1133757 | 15501.4 |
| mfs transporter | VO01_RS05485 | Not Available | Negative | 1133766 - 1135073 | 43942.5 |
| peptide chain release factor 2 | VO01_RS05490 | Not Available | Positive | 1135149 - 1136252 | 40914.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
