Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3039 domain-containing protein | VO01_RS05395 | Not Available | Positive | 1119070 - 1119357 | 10622.7 |
| nicotinate phosphoribosyltransferase | VO01_RS05400 | Not Available | Negative | 1119382 - 1120698 | 46083.5 |
| cryptochrome/photolyase family protein | VO01_RS05405 | Not Available | Positive | 1120789 - 1122252 | 54991.9 |
| glutamate racemase | VO01_RS05410 | Not Available | Positive | 1122311 - 1123195 | 31056.9 |
| ribonuclease ph | VO01_RS05415 | Not Available | Positive | 1123204 - 1123941 | 26186.2 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | VO01_RS05420 | Not Available | Positive | 1123952 - 1124560 | 20989.9 |
| cation diffusion facilitator family transporter | VO01_RS05425 | Not Available | Positive | 1124651 - 1125568 | 31529.3 |
| deda family protein | VO01_RS05430 | Not Available | Negative | 1125664 - 1126392 | 26345.1 |
| pyridoxal-phosphate dependent enzyme | VO01_RS05435 | Not Available | Negative | 1126517 - 1127440 | 31499.6 |
| Trna-leu | Not Available | Not Available | Positive | 1127504 - 1127588 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
