Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | VO01_RS05345 | Not Available | Positive | 1109075 - 1109950 | 31688.1 |
| membrane protein | VO01_RS05350 | Not Available | Positive | 1110048 - 1111334 | 48388.0 |
| hypothetical protein | VO01_RS05355 | Not Available | Negative | 1111378 - 1112127 | 25810.6 |
| helix-turn-helix domain-containing protein | VO01_RS05360 | Not Available | Positive | 1112281 - 1112604 | 11683.8 |
| hypothetical protein | VO01_RS05365 | Not Available | Negative | 1112594 - 1112905 | 11766.3 |
| abc transporter atp-binding protein | VO01_RS05370 | Not Available | Negative | 1112990 - 1113769 | 28477.2 |
| abc transporter permease | VO01_RS05375 | Not Available | Negative | 1113769 - 1114569 | 29469.5 |
| ntp transferase domain-containing protein | VO01_RS05380 | Not Available | Negative | 1114606 - 1115298 | 25373.2 |
| atp-binding cassette domain-containing protein | VO01_RS17770 | Not Available | Positive | 1115967 - 1117469 | 51247.0 |
| hypothetical protein | VO01_RS05390 | Not Available | Positive | 1117445 - 1119016 | 53228.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
