Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | VO01_RS05300 | Not Available | Negative | 1098492 - 1099190 | 24650.9 |
| sensor histidine kinase | VO01_RS05305 | Not Available | Negative | 1099187 - 1100428 | 43124.2 |
| abc transporter permease subunit | VO01_RS05310 | Not Available | Negative | 1100524 - 1101363 | 29090.6 |
| abc transporter atp-binding protein | VO01_RS05315 | Not Available | Negative | 1101360 - 1102295 | 32583.4 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | VO01_RS05320 | Not Available | Negative | 1102425 - 1103630 | 42424.2 |
| hypothetical protein | VO01_RS16670 | Not Available | Positive | 1103952 - 1104371 | 15121.4 |
| hypothetical protein | VO01_RS17765 | Not Available | Positive | 1104746 - 1105273 | 18064.3 |
| s1c family serine protease | VO01_RS05330 | Not Available | Positive | 1105498 - 1107036 | 49581.1 |
| glycosyltransferase family 2 protein | VO01_RS05335 | Not Available | Positive | 1107187 - 1108260 | 38274.1 |
| cdp-alcohol phosphatidyltransferase family protein | VO01_RS05340 | Not Available | Positive | 1108257 - 1109078 | 29250.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
