Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS05060 | Not Available | Positive | 1047605 - 1048204 | 19833.5 |
| hypothetical protein | VO01_RS05065 | Not Available | Positive | 1048276 - 1048470 | 6915.87 |
| dead/deah box helicase | VO01_RS05070 | Not Available | Negative | 1048561 - 1050321 | 64106.2 |
| class i sam-dependent methyltransferase | VO01_RS05075 | Not Available | Negative | 1050382 - 1051245 | 30697.5 |
| helix-turn-helix transcriptional regulator | VO01_RS05080 | Not Available | Positive | 1051293 - 1051913 | 22162.4 |
| pasta domain-containing protein | VO01_RS05085 | Not Available | Negative | 1051910 - 1053406 | 48141.3 |
| hypothetical protein | VO01_RS17335 | Not Available | Negative | 1053525 - 1053695 | 5527.66 |
| cation:proton antiporter | VO01_RS05090 | Not Available | Negative | 1053837 - 1055366 | 53228.6 |
| alpha/beta hydrolase | VO01_RS05095 | Not Available | Negative | 1055425 - 1056048 | 21621.5 |
| ring-cleaving dioxygenase | VO01_RS05100 | Not Available | Negative | 1056045 - 1057022 | 34808.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
