Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS05010 | Not Available | Positive | 1037649 - 1038170 | 20266.7 |
| yitt family protein | VO01_RS05015 | Not Available | Positive | 1038303 - 1038965 | 23047.8 |
| duf3817 domain-containing protein | VO01_RS05020 | Not Available | Negative | 1038976 - 1039470 | 17196.0 |
| sialate o-acetylesterase | VO01_RS05025 | Not Available | Positive | 1039858 - 1043127 | 110779.0 |
| cation transporter | VO01_RS05030 | Not Available | Negative | 1043173 - 1043856 | 23245.0 |
| arsr/smtb family transcription factor | VO01_RS05035 | Not Available | Negative | 1043853 - 1044206 | 12447.1 |
| low molecular weight phosphatase family protein | VO01_RS05040 | Not Available | Positive | 1044317 - 1044754 | 15144.0 |
| tetr/acrr family transcriptional regulator | VO01_RS05045 | Not Available | Negative | 1044751 - 1045377 | 22700.1 |
| carboxylesterase family protein | VO01_RS05050 | Not Available | Positive | 1045455 - 1046771 | 46841.4 |
| gnat family n-acetyltransferase | VO01_RS05055 | Not Available | Negative | 1046841 - 1047407 | 19919.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
