Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotransferase | VO01_RS04910 | Not Available | Negative | 1012485 - 1013561 | 37986.8 |
| nad(+) diphosphatase | VO01_RS04915 | Not Available | Positive | 1013702 - 1014655 | 34120.0 |
| atp-dependent helicase | VO01_RS04920 | Not Available | Positive | 1014666 - 1016594 | 69047.0 |
| 30s ribosomal protein s6 | VO01_RS18100 | Not Available | Negative | 1016560 - 1017345 | 27710.4 |
| zinc-dependent metalloprotease | VO01_RS04930 | Not Available | Negative | 1017439 - 1018854 | 50520.6 |
| pdz domain-containing protein | VO01_RS04935 | Not Available | Positive | 1019067 - 1020149 | 37477.2 |
| upf0182 family protein | VO01_RS04940 | Not Available | Positive | 1020300 - 1023230 | 105718.0 |
| Trna-met | Not Available | Not Available | Positive | 1023386 - 1023459 | Not Available |
| peroxiredoxin-like family protein | VO01_RS04950 | Not Available | Negative | 1023527 - 1024192 | 22963.9 |
| abc1 kinase family protein | VO01_RS04955 | Not Available | Negative | 1024321 - 1026042 | 62842.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
