Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| php domain-containing protein | VO01_RS04860 | Not Available | Positive | 1000840 - 1001721 | 30997.5 |
| hypothetical protein | VO01_RS04865 | Not Available | Positive | 1001867 - 1002184 | 10729.7 |
| hypothetical protein | VO01_RS04870 | Not Available | Positive | 1002188 - 1002439 | 8623.22 |
| hypothetical protein | VO01_RS04875 | Not Available | Positive | 1002432 - 1002731 | 11799.1 |
| dead/deah box helicase | VO01_RS04880 | Not Available | Negative | 1002804 - 1004372 | 55922.1 |
| ferritin-like fold-containing protein | VO01_RS04885 | Not Available | Positive | 1004522 - 1005241 | 25632.8 |
| hypothetical protein | VO01_RS04890 | Not Available | Negative | 1005321 - 1005608 | 9919.36 |
| duf3107 domain-containing protein | VO01_RS04895 | Not Available | Negative | 1005619 - 1005843 | 8106.56 |
| atp-dependent helicase | VO01_RS04900 | Not Available | Positive | 1006016 - 1009285 | 115194.0 |
| atp-dependent dna helicase | VO01_RS04905 | Not Available | Positive | 1009282 - 1012572 | 118240.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
