Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-methyltransferase | VO01_RS04815 | Not Available | Negative | 991804 - 992436 | 22147.4 |
| translocase | VO01_RS04820 | Not Available | Positive | 992587 - 992961 | 14153.2 |
| lysr family transcriptional regulator | VO01_RS04825 | Not Available | Negative | 992995 - 993912 | 32265.8 |
| hypothetical protein | VO01_RS18020 | Not Available | Positive | 994028 - 994150 | 4213.2 |
| mrp/nbp35 family atp-binding protein | VO01_RS04830 | Not Available | Negative | 994250 - 995425 | 40016.6 |
| duf1003 domain-containing protein | VO01_RS04835 | Not Available | Negative | 995415 - 995966 | 20923.8 |
| magnesium transporter mgte n-terminal domain-containing protein | VO01_RS04840 | Not Available | Negative | 995950 - 997296 | 48826.2 |
| general stress protein | VO01_RS04845 | Not Available | Positive | 997355 - 998017 | 22792.2 |
| aminopeptidase p family protein | VO01_RS04850 | Not Available | Negative | 998046 - 999680 | 57770.1 |
| endonuclease/exonuclease/phosphatase family protein | VO01_RS04855 | Not Available | Negative | 999722 - 1000747 | 35658.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
