Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxide stress protein yaaa | VO01_RS04770 | Not Available | Positive | 983187 - 983942 | 26828.3 |
| dna-3-methyladenine glycosylase i | VO01_RS04775 | Not Available | Negative | 983968 - 984561 | 21868.0 |
| methylated-dna--[protein]-cysteine s-methyltransferase | VO01_RS04780 | Not Available | Negative | 984558 - 985178 | 20941.4 |
| lrp/asnc family transcriptional regulator | VO01_RS04785 | Not Available | Negative | 985286 - 985765 | 17186.6 |
| fha domain-containing protein | VO01_RS04790 | Not Available | Positive | 985995 - 987110 | 37818.9 |
| pp2c family protein-serine/threonine phosphatase | VO01_RS04795 | Not Available | Positive | 987107 - 987943 | 29654.8 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | VO01_RS04800 | Not Available | Negative | 987996 - 988994 | 33949.4 |
| succinyl-diaminopimelate desuccinylase | VO01_RS04805 | Not Available | Positive | 989075 - 990172 | 39119.0 |
| hypothetical protein | VO01_RS04810 | Not Available | Positive | 990154 - 991494 | 47814.9 |
| duf3117 domain-containing protein | VO01_RS16655 | Not Available | Positive | 991524 - 991697 | 5886.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
