Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | VO01_RS15810 | Not Available | Negative | 46460 - 47083 | 22439.9 |
| hypothetical protein | VO01_RS15815 | Not Available | Positive | 47307 - 47579 | 10211.3 |
| hypothetical protein | VO01_RS15820 | Not Available | Positive | 47576 - 47950 | 13488.9 |
| hypothetical protein | VO01_RS15825 | Not Available | Positive | 48144 - 48854 | 25580.0 |
| chromosomal replication initiator protein dnaa | VO01_RS00005 | Not Available | Positive | 1 - 1434 | 53255.5 |
| dna polymerase iii subunit beta | VO01_RS00010 | Not Available | Positive | 1998 - 3149 | 41462.2 |
| phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating) | VO01_RS00015 | Not Available | Positive | 3170 - 4057 | 31685.8 |
| dna replication/repair protein recf | VO01_RS00020 | Not Available | Positive | 4065 - 5267 | 43086.3 |
| duf721 domain-containing protein | VO01_RS00025 | Not Available | Positive | 5264 - 5776 | 18516.9 |
| dna topoisomerase (atp-hydrolyzing) subunit b | VO01_RS00030 | Not Available | Positive | 5966 - 8011 | 75380.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
