Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2993 domain-containing protein | VO01_RS04670 | Not Available | Positive | 961904 - 962734 | 29303.0 |
| diaminopimelate decarboxylase family protein | VO01_RS04675 | Not Available | Positive | 962890 - 964389 | 52062.5 |
| homoserine dehydrogenase | VO01_RS04680 | Not Available | Positive | 964386 - 965717 | 45837.5 |
| threonine synthase | VO01_RS04685 | Not Available | Positive | 965717 - 966793 | 37189.3 |
| homoserine kinase | VO01_RS04690 | Not Available | Positive | 966805 - 967755 | 32617.2 |
| transcription termination factor rho | VO01_RS04695 | Not Available | Positive | 968052 - 970520 | 87611.5 |
| peptide chain release factor 1 | VO01_RS04700 | Not Available | Positive | 970526 - 971605 | 39886.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | VO01_RS04705 | Not Available | Positive | 971630 - 972505 | 30466.4 |
| had-ia family hydrolase | VO01_RS04710 | Not Available | Negative | 972544 - 973197 | 23647.7 |
| l-threonylcarbamoyladenylate synthase | VO01_RS04715 | Not Available | Positive | 973269 - 974225 | 32523.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
