Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal 5'-phosphate synthase | VO01_RS04625 | Not Available | Positive | 953996 - 954688 | 25542.6 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | VO01_RS04630 | Not Available | Positive | 954767 - 955534 | 26683.5 |
| 30s ribosomal protein s6 | VO01_RS04635 | Not Available | Negative | 955584 - 956338 | 26195.8 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS04640 | Not Available | Negative | 956335 - 957102 | 25745.8 |
| hypothetical protein | VO01_RS16650 | Not Available | Negative | 957099 - 957269 | 5463.76 |
| asparaginase | VO01_RS04645 | Not Available | Negative | 957266 - 957901 | 21799.0 |
| substrate-binding domain-containing protein | VO01_RS04650 | Not Available | Positive | 957876 - 958763 | 30577.0 |
| transglutaminase-like domain-containing protein | VO01_RS04655 | Not Available | Positive | 958727 - 959374 | 23374.1 |
| hypothetical protein | VO01_RS04660 | Not Available | Negative | 959384 - 960028 | 21296.2 |
| arginine--trna ligase | VO01_RS04665 | Not Available | Positive | 960228 - 961892 | 60442.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
