Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s oxidoreductase | VO01_RS04575 | Not Available | Negative | 945010 - 945402 | 13921.0 |
| dihydrolipoyl dehydrogenase family protein | VO01_RS04580 | Not Available | Negative | 945399 - 946832 | 49300.2 |
| crotonase/enoyl-coa hydratase family protein | VO01_RS04585 | Not Available | Negative | 946889 - 947728 | 29132.0 |
| arginase family protein | VO01_RS04590 | Not Available | Negative | 947797 - 948639 | 27776.0 |
| nadph-dependent f420 reductase | VO01_RS04595 | Not Available | Negative | 948730 - 949377 | 22943.0 |
| pspa/im30 family protein | VO01_RS04600 | Not Available | Negative | 949472 - 950215 | 27333.0 |
| tpm domain-containing protein | VO01_RS04605 | Not Available | Negative | 950300 - 952324 | 69153.8 |
| 2'-5' rna ligase family protein | VO01_RS04610 | Not Available | Negative | 952413 - 952838 | 14652.6 |
| antitoxin | VO01_RS04615 | Not Available | Negative | 952967 - 953209 | 8215.83 |
| Trna-arg | Not Available | Not Available | Positive | 953415 - 953486 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
