Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | VO01_RS04525 | Not Available | Positive | 934253 - 935257 | 35013.2 |
| 3-hexulose-6-phosphate synthase | VO01_RS04530 | Not Available | Negative | 935333 - 935956 | 20758.8 |
| 6-phospho-3-hexuloisomerase | VO01_RS04535 | Not Available | Negative | 936013 - 936621 | 20804.6 |
| luxr c-terminal-related transcriptional regulator | VO01_RS17745 | Not Available | Positive | 936741 - 938054 | 45521.0 |
| bifunctional metallophosphatase/5'-nucleotidase | VO01_RS04545 | Not Available | Positive | 938179 - 940326 | 73230.8 |
| amidase | VO01_RS04550 | Not Available | Positive | 940414 - 941841 | 50858.3 |
| sulfite exporter taue/safe family protein | VO01_RS04555 | Not Available | Negative | 941881 - 942618 | 24680.2 |
| siderophore-interacting protein | VO01_RS04560 | Not Available | Positive | 942750 - 943691 | 34152.5 |
| sip domain-containing protein | VO01_RS04565 | Not Available | Positive | 943694 - 944098 | 13967.9 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS04570 | Not Available | Negative | 944135 - 945013 | 31348.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
