Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarylacetoacetate hydrolase family protein | VO01_RS04395 | Not Available | Positive | 909850 - 910623 | 27571.5 |
| hypothetical protein | VO01_RS04400 | Not Available | Positive | 910626 - 911396 | 26690.5 |
| glutamate--trna ligase | VO01_RS04405 | Not Available | Positive | 911410 - 912930 | 56152.7 |
| nad(p)/fad-dependent oxidoreductase | VO01_RS04410 | Not Available | Positive | 912923 - 913873 | 33587.8 |
| Trna-gln | Not Available | Not Available | Positive | 913962 - 914033 | Not Available |
| hypothetical protein | VO01_RS17035 | Not Available | Positive | 914513 - 915541 | 37313.2 |
| aldo/keto reductase family protein | VO01_RS04420 | Not Available | Negative | 915610 - 916620 | 36810.1 |
| tyrosine-type recombinase/integrase | VO01_RS04425 | Not Available | Positive | 916778 - 917899 | 41965.1 |
| hypothetical protein | VO01_RS04430 | Not Available | Positive | 918286 - 918996 | 26716.1 |
| hypothetical protein | VO01_RS04435 | Not Available | Positive | 919218 - 919604 | 13506.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
