Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketol-acid reductoisomerase | VO01_RS04345 | Not Available | Positive | 900656 - 901681 | 37013.5 |
| hypothetical protein | VO01_RS04350 | Not Available | Positive | 901800 - 902354 | 18800.1 |
| hypothetical protein | VO01_RS04355 | Not Available | Positive | 902351 - 902719 | 12278.3 |
| doxx family membrane protein | VO01_RS04360 | Not Available | Negative | 902746 - 903147 | 14082.0 |
| phosphoglycerate dehydrogenase | VO01_RS04365 | Not Available | Positive | 903210 - 904799 | 55528.9 |
| tetr/acrr family transcriptional regulator | VO01_RS04370 | Not Available | Negative | 904869 - 905486 | 21476.3 |
| mfs transporter | VO01_RS04375 | Not Available | Positive | 905609 - 907150 | 52401.2 |
| duf6458 family protein | VO01_RS04380 | Not Available | Negative | 907227 - 907481 | 8820.02 |
| 3-isopropylmalate dehydrogenase | VO01_RS04385 | Not Available | Positive | 907594 - 908661 | 37129.1 |
| branched-chain amino acid aminotransferase | VO01_RS04390 | Not Available | Positive | 908670 - 909788 | 40555.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
