Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trehalose-phosphatase | VO01_RS04295 | Not Available | Positive | 888763 - 889590 | 29365.6 |
| na+/h+ antiporter subunit a | VO01_RS04300 | Not Available | Positive | 889665 - 892673 | 104944.0 |
| na(+)/h(+) antiporter subunit c | VO01_RS04305 | Not Available | Positive | 892670 - 893230 | 20304.1 |
| na+/h+ antiporter subunit d | VO01_RS04310 | Not Available | Positive | 893227 - 894819 | 55269.7 |
| na+/h+ antiporter subunit e | VO01_RS04315 | Not Available | Positive | 894816 - 895490 | 25427.2 |
| monovalent cation/h+ antiporter complex subunit f | VO01_RS04320 | Not Available | Positive | 895487 - 895762 | 9737.41 |
| monovalent cation/h(+) antiporter subunit g | VO01_RS04325 | Not Available | Positive | 895759 - 896340 | 19930.2 |
| dihydroxy-acid dehydratase | VO01_RS04330 | Not Available | Positive | 896407 - 898101 | 59368.6 |
| acetolactate synthase large subunit | VO01_RS04335 | Not Available | Positive | 898146 - 899981 | 65173.8 |
| acetolactate synthase small subunit | VO01_RS04340 | Not Available | Positive | 899978 - 900487 | 18401.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
