Nitrosopumilus piranensis strain D3C

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Nitrososphaeria

Order

Nitrosopumilales

Family

Nitrosopumilaceae

Genus

Nitrosopumilus

Description

Nitrosopumilus piranensis strain D3C is a notable archaeal organism characterized by its single replicon and has been cataloged under the accession number NZ_CP010868.1. This strain is part of the wider Nitrosopumilus genus, which consists of ammonia-oxidizing archaea. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to the organism's efficiency in its ecological niche. As a member of the ammonia-oxidizing archaea, Nitrosopumilus piranensis plays a pivotal role in the nitrogen cycle, particularly in the process of nitrification. This process is essential for converting ammonia into nitrite and subsequently into nitrate, thereby facilitating nutrient availability in various ecosystems. Understanding the genomic and physiological traits of Nitrosopumilus piranensis can provide insights into its ecological functions, especially in marine environments where it may contribute to nitrogen transformations. The streamlined genomic structure might also reflect adaptations that enable survival in specific habitats, highlighting the importance of such microorganisms in biogeochemical cycles. Such insights underscore the significance of studying individual strains like D3C to appreciate their contributions to ecosystem dynamics.

Taxonomy

KingdomThermoproteati
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesNitrosopumilus piranensis
Strainstrain D3C

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrosopumilus piranensis strain D3C chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2114 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diphthamide biosynthesis enzyme dph2NPIRD3C_RS02405Not AvailableNegative420454 - 42144936649.0
trna(ile)(2)-agmatinylcytidine synthaseNPIRD3C_RS02410Not AvailablePositive421507 - 42285951183.3
s-methyl-5-thioribose-1-phosphate isomeraseNPIRD3C_RS02415Not AvailablePositive422943 - 42399837756.5
pqqd family peptide modification chaperoneNPIRD3C_RS02420Not AvailablePositive424038 - 42467623473.3
sdr family nad(p)-dependent oxidoreductaseNPIRD3C_RS02425Not AvailableNegative424679 - 42532623883.6
tyrosine-type recombinase/integraseNPIRD3C_RS02430Not AvailablePositive425411 - 42649942424.9
antitoxin vapb family proteinNPIRD3C_RS10830Not AvailablePositive426777 - 4268994619.51
hypothetical proteinNPIRD3C_RS02435Not AvailablePositive426899 - 4271208182.98
hypothetical proteinNPIRD3C_RS02440Not AvailablePositive427277 - 4274898402.98
hnh endonucleaseNPIRD3C_RS02445Not AvailablePositive427563 - 42812021147.5

Displaying genes 491 – 500 of 2155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.