Nitrosopumilus piranensis strain D3C

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Nitrososphaeria

Order

Nitrosopumilales

Family

Nitrosopumilaceae

Genus

Nitrosopumilus

Description

Nitrosopumilus piranensis strain D3C is a notable archaeal organism characterized by its single replicon and has been cataloged under the accession number NZ_CP010868.1. This strain is part of the wider Nitrosopumilus genus, which consists of ammonia-oxidizing archaea. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to the organism's efficiency in its ecological niche. As a member of the ammonia-oxidizing archaea, Nitrosopumilus piranensis plays a pivotal role in the nitrogen cycle, particularly in the process of nitrification. This process is essential for converting ammonia into nitrite and subsequently into nitrate, thereby facilitating nutrient availability in various ecosystems. Understanding the genomic and physiological traits of Nitrosopumilus piranensis can provide insights into its ecological functions, especially in marine environments where it may contribute to nitrogen transformations. The streamlined genomic structure might also reflect adaptations that enable survival in specific habitats, highlighting the importance of such microorganisms in biogeochemical cycles. Such insights underscore the significance of studying individual strains like D3C to appreciate their contributions to ecosystem dynamics.

Taxonomy

KingdomThermoproteati
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesNitrosopumilus piranensis
Strainstrain D3C

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrosopumilus piranensis strain D3C chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2114 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide-methionine (r)-s-oxide reductase msrbNPIRD3C_RS07425Not AvailablePositive1227546 - 122795315460.8
homoserine dehydrogenaseNPIRD3C_RS07430Not AvailablePositive1228046 - 122905635982.6
pua domain-containing proteinNPIRD3C_RS07435Not AvailablePositive1229053 - 122952917914.9
proteasome subunit betaNPIRD3C_RS07440Not AvailableNegative1229535 - 123013121345.3
doxx family proteinNPIRD3C_RS07445Not AvailablePositive1230227 - 123064614473.5
m20/m25/m40 family metallo-hydrolaseNPIRD3C_RS07450Not AvailableNegative1230643 - 123199550021.2
nad(p)h-hydrate dehydrataseNPIRD3C_RS07455Not AvailableNegative1232000 - 123286330539.9
trna (adenine-n1)-methyltransferaseNPIRD3C_RS07460Not AvailableNegative1232908 - 123377132419.7
hypothetical proteinNPIRD3C_RS07465Not AvailablePositive1234114 - 12343027383.87
hypothetical proteinNPIRD3C_RS07470Not AvailablePositive1234541 - 123489112845.2

Displaying genes 1531 – 1540 of 2155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.