Nitrosopumilus piranensis strain D3C

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Nitrososphaeria

Order

Nitrosopumilales

Family

Nitrosopumilaceae

Genus

Nitrosopumilus

Description

Nitrosopumilus piranensis strain D3C is a notable archaeal organism characterized by its single replicon and has been cataloged under the accession number NZ_CP010868.1. This strain is part of the wider Nitrosopumilus genus, which consists of ammonia-oxidizing archaea. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to the organism's efficiency in its ecological niche. As a member of the ammonia-oxidizing archaea, Nitrosopumilus piranensis plays a pivotal role in the nitrogen cycle, particularly in the process of nitrification. This process is essential for converting ammonia into nitrite and subsequently into nitrate, thereby facilitating nutrient availability in various ecosystems. Understanding the genomic and physiological traits of Nitrosopumilus piranensis can provide insights into its ecological functions, especially in marine environments where it may contribute to nitrogen transformations. The streamlined genomic structure might also reflect adaptations that enable survival in specific habitats, highlighting the importance of such microorganisms in biogeochemical cycles. Such insights underscore the significance of studying individual strains like D3C to appreciate their contributions to ecosystem dynamics.

Taxonomy

KingdomThermoproteati
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesNitrosopumilus piranensis
Strainstrain D3C

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrosopumilus piranensis strain D3C chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2114 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ef-tu/if-2/rf-3 family gtpaseNPIRD3C_RS05860Not AvailablePositive996146 - 99706633805.2
nicotinamide-nucleotide adenylyltransferaseNPIRD3C_RS05865Not AvailablePositive997101 - 99763120166.2
ketol-acid reductoisomeraseNPIRD3C_RS05870Not AvailablePositive997790 - 99878836920.2
cobalamin b12-binding domain-containing proteinNPIRD3C_RS05875Not AvailableNegative998799 - 99922115108.8
m1 family metallopeptidaseNPIRD3C_RS05880Not AvailablePositive999359 - 100185195005.7
hypothetical proteinNPIRD3C_RS05885Not AvailablePositive1001853 - 100226015142.3
methylmalonyl co-a mutase-associated gtpase meabNPIRD3C_RS05890Not AvailablePositive1002304 - 100322133182.4
acyl-coa mutase large subunit family proteinNPIRD3C_RS05895Not AvailablePositive1003226 - 100482459722.7
methylmalonyl-coa epimeraseNPIRD3C_RS05900Not AvailablePositive1004825 - 100522014313.2
cbs domain-containing proteinNPIRD3C_RS05905Not AvailableNegative1005239 - 100579620338.9

Displaying genes 1201 – 1210 of 2155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.