Phaeobacter piscinae strain P13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter piscinae strain P13 is a Gram-negative, rod-shaped bacterium isolated from a turbot rearing facility. This organism is notable for its unique genomic structure, possessing a total of four replicons, which may contribute to its adaptability and survival in aquaculture environments. The habitat from which P. piscinae strain P13 was obtained highlights its potential role in marine aquaculture, specifically in the rearing of turbot, a species of flatfish. The presence of this bacterium in a controlled aquaculture setting suggests that it may play a role in the microbial dynamics of such environments, possibly influencing water quality or interacting with other microbial communities. With accessions NZ_CP010771.1, NZ_CP010773.1, NZ_CP010774.1, and NZ_CP010768.1, the genomic data for Phaeobacter piscinae strain P13 can be further explored to understand its metabolic capabilities and ecological functions. The presence of multiple replicons may also indicate a complex regulatory system that could enhance its resilience and functional versatility in the aquatic ecosystem. In summary, Phaeobacter piscinae strain P13 exemplifies the microbial diversity present in aquaculture facilities. Its characteristics and genomic configuration suggest that it may have significant implications for the health and management of turbot populations, as well as the broader ecological interactions within marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter piscinae
Strainstrain P13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatturbot rearing facility
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter piscinae strain P13 plasmid pP13_f, complete sequence.

Gene Summary

Adenine Count

12618 bp

Thymine Count

12719 bp

Guanine Count

22451 bp

Cytosine Count

21417 bp

Genome Length

69205 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ligase-associated dna damage response exonucleasePhaeoP13_RS17505Not AvailableNegative59785 - 6079837225.4
mate family efflux transporterPhaeoP13_RS17510Not AvailablePositive60992 - 6232645296.7
dna topoisomerase ibPhaeoP13_RS17515Not AvailableNegative62336 - 6331335916.5
nad-dependent succinate-semialdehyde dehydrogenasePhaeoP13_RS17520Not AvailableNegative63388 - 6476749391.5
putative dna modification/repair radical sam proteinPhaeoP13_RS17525Not AvailablePositive64957 - 6619246081.4
udgx family uracil-dna binding proteinPhaeoP13_RS17530Not AvailablePositive66192 - 6763753677.4
hypothetical proteinPhaeoP13_RS17535Not AvailableNegative67664 - 679218556.22
polysaccharide biosynthesis/export family proteinPhaeoP13_RS17540Not AvailableNegative67948 - 6932149297.2
yjbf family lipoproteinPhaeoP13_RS17545Not AvailableNegative69378 - 7003724321.9
yjbh domain-containing proteinPhaeoP13_RS17550Not AvailableNegative70034 - 7216377773.9

Displaying genes 101 – 110 of 368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.