Phaeobacter piscinae strain P13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter piscinae strain P13 is a Gram-negative, rod-shaped bacterium isolated from a turbot rearing facility. This organism is notable for its unique genomic structure, possessing a total of four replicons, which may contribute to its adaptability and survival in aquaculture environments. The habitat from which P. piscinae strain P13 was obtained highlights its potential role in marine aquaculture, specifically in the rearing of turbot, a species of flatfish. The presence of this bacterium in a controlled aquaculture setting suggests that it may play a role in the microbial dynamics of such environments, possibly influencing water quality or interacting with other microbial communities. With accessions NZ_CP010771.1, NZ_CP010773.1, NZ_CP010774.1, and NZ_CP010768.1, the genomic data for Phaeobacter piscinae strain P13 can be further explored to understand its metabolic capabilities and ecological functions. The presence of multiple replicons may also indicate a complex regulatory system that could enhance its resilience and functional versatility in the aquatic ecosystem. In summary, Phaeobacter piscinae strain P13 exemplifies the microbial diversity present in aquaculture facilities. Its characteristics and genomic configuration suggest that it may have significant implications for the health and management of turbot populations, as well as the broader ecological interactions within marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter piscinae
Strainstrain P13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatturbot rearing facility
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter piscinae strain P13 plasmid pP13_f, complete sequence.

Gene Summary

Adenine Count

12618 bp

Thymine Count

12719 bp

Guanine Count

22451 bp

Cytosine Count

21417 bp

Genome Length

69205 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crtac1 family proteinPhaeoP13_RS17455Not AvailableNegative50038 - 5159456170.7
rok family transcriptional regulatorPhaeoP13_RS17460Not AvailableNegative51584 - 5279843357.3
d-xylose abc transporter substrate-binding proteinPhaeoP13_RS17465Not AvailablePositive52985 - 5401035100.1
sugar abc transporter permeasePhaeoP13_RS17470Not AvailablePositive54129 - 5543045704.1
atp-binding cassette domain-containing proteinPhaeoP13_RS17475Not AvailablePositive55427 - 5620927807.4
merr family transcriptional regulatorPhaeoP13_RS17480Not AvailablePositive56334 - 5676215805.0
type ii toxin-antitoxin system rele/pare family toxinPhaeoP13_RS17485Not AvailableNegative56775 - 5713113373.7
type ii toxin-antitoxin system pard family antitoxinPhaeoP13_RS17490Not AvailableNegative57115 - 5739010000.9
tryptophan-rich sensory proteinPhaeoP13_RS17495Not AvailableNegative57429 - 5815125425.5
cisplatin damage response atp-dependent dna ligasePhaeoP13_RS17500Not AvailableNegative58229 - 5978557654.0

Displaying genes 91 – 100 of 368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.