Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycogen debranching protein | SB49_RS03470 | Not Available | Positive | 783828 - 786260 | 91550.5 |
| mfs transporter | SB49_RS03475 | Not Available | Positive | 786605 - 787810 | 42515.4 |
| 3-isopropylmalate dehydrogenase | SB49_RS03480 | Not Available | Negative | 787933 - 788988 | 38527.9 |
| alpha-isopropylmalate synthase regulatory domain-containing protein | SB49_RS03485 | Not Available | Negative | 789043 - 790560 | 56512.6 |
| 3-isopropylmalate dehydratase small subunit | SB49_RS03490 | Not Available | Negative | 790651 - 791247 | 22427.4 |
| 3-isopropylmalate dehydratase large subunit | SB49_RS03495 | Not Available | Negative | 791295 - 792707 | 50784.7 |
| atp-dependent dna helicase recg | SB49_RS03500 | Not Available | Negative | 792982 - 795087 | 80009.6 |
| m1 family metallopeptidase | SB49_RS03505 | Not Available | Positive | 795170 - 797248 | 80280.7 |
| patatin family protein | SB49_RS03510 | Not Available | Positive | 797250 - 798155 | 34181.3 |
| patatin family protein | SB49_RS03515 | Not Available | Positive | 798152 - 799051 | 34135.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
