Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase-like regulatory domain-containing protein | SB49_RS01680 | Not Available | Negative | 359633 - 360964 | 51114.7 |
| pepsy domain-containing protein | SB49_RS01685 | Not Available | Negative | 361163 - 361729 | 21721.6 |
| m14 family zinc carboxypeptidase | SB49_RS01690 | Not Available | Negative | 361768 - 364215 | 91589.2 |
| bacillithiol biosynthesis cysteine-adding enzyme bshc | SB49_RS01695 | Not Available | Positive | 364343 - 365947 | 61865.1 |
| pyridoxamine 5'-phosphate oxidase family protein | SB49_RS01700 | Not Available | Negative | 365989 - 366534 | 21257.5 |
| aminotransferase class v-fold plp-dependent enzyme | SB49_RS01705 | Not Available | Positive | 366801 - 368171 | 50548.4 |
| glutamine-hydrolyzing gmp synthase | SB49_RS01710 | Not Available | Positive | 368247 - 369779 | 56595.6 |
| lysm peptidoglycan-binding domain-containing protein | SB49_RS01715 | Not Available | Positive | 369782 - 371935 | 81689.0 |
| hydroxypyruvate isomerase family protein | SB49_RS01720 | Not Available | Negative | 372038 - 372904 | 32620.4 |
| duf3820 family protein | SB49_RS01725 | Not Available | Positive | 372955 - 373191 | 9267.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
